Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3245

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11612 and 11613 are separated by 459 nucleotides mRNA_3244: 11612 - Hypothetical Protein, at 199,306 to 200,606 11612 mRNA_3245: 11613 - HMMPfam-Fungal protein of unknown function (DUF1752)-PF08550,HMMPfam-Protein of unknown function (DUF3295)-PF11702, at 201,066 to 204,037 11613

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
200,108 + 11612 mRNA_3244 0.62 +0.6
200,206 + 11612 mRNA_3244 0.69 -0.8
200,479 + +0.7
200,500 - -1.3
200,515 - -0.7
200,553 - -0.4
200,597 + -0.2
201,006 - -0.2
201,130 - -0.2
202,039 + 11613 mRNA_3245 0.33 -0.8
202,325 + 11613 mRNA_3245 0.42 -1.0
202,630 + 11613 mRNA_3245 0.53 -0.5
202,767 - 11613 mRNA_3245 0.57 -1.4
203,376 - 11613 mRNA_3245 0.78 +0.1
203,509 + 11613 mRNA_3245 0.82 -1.1
203,657 - 11613 mRNA_3245 0.87 +0.1
203,661 + 11613 mRNA_3245 0.87 -0.0
203,790 - +0.0
203,799 - +0.1
203,946 + -0.6
203,947 + +0.4
204,103 - +0.3
204,225 - -1.0
204,225 - -0.2
204,225 - -0.6
204,234 - +0.2
204,235 - -0.5
204,238 + +0.3
204,250 - +0.5
204,251 + -0.1
204,270 + +0.6
204,278 + +0.3
204,280 + -2.3
204,286 - -0.5
204,290 - -0.4
204,291 - -0.8
204,298 + -1.0
204,314 + -0.3
204,335 - +0.4
204,357 - +0.7
204,383 - +0.2
204,393 - +1.0
204,412 + -1.5
204,437 - -0.1
204,443 - -2.1
204,445 + +1.2
204,447 - +0.8
204,448 + +0.5
204,448 - -0.3
204,454 + +0.0
204,454 + -0.6
204,455 - +0.8
204,463 + -0.1
204,468 - -1.0
204,473 + -0.4
204,479 + -0.3
204,484 - +0.1
204,491 - -0.0
204,511 - +0.3
204,528 - -0.2
204,534 - -0.5
204,547 - -0.5
204,557 + -0.4
204,639 + -0.7
204,647 + +1.0
204,652 - +0.8
204,654 + -0.6
204,664 - -0.2
204,665 + -0.9
204,678 + -0.5
204,695 + -2.6
204,699 + -0.1
204,724 - -0.4
204,727 + -1.0
204,801 - +1.8
204,811 + +0.8
204,826 + -1.0
204,957 - +0.5

Or see this region's nucleotide sequence