Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3247

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11614 and 11615 are separated by 397 nucleotides11615 and 11616 are separated by 907 nucleotides mRNA_3246: 11614 - Hypothetical Protein, at 205,429 to 207,188 11614 mRNA_3247: 11615 - Hypothetical Protein, at 207,586 to 209,247 11615 mRNA_3248: 11616 - Hypothetical Protein, at 210,155 to 211,275 11616

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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206,716 - 11614 mRNA_3246 0.73 -1.2
206,970 - 11614 mRNA_3246 0.88 -0.2
206,989 + 11614 mRNA_3246 0.89 -0.7
207,159 - +0.7
207,285 - -0.3
207,317 + +0.4
207,327 - -0.5
207,356 + +0.3
207,427 - +0.8
207,605 - +1.3
207,618 - -0.2
207,634 + +0.9
207,730 + +0.0
207,734 + -0.9
207,865 - 11615 mRNA_3247 0.17 +0.1
207,926 - 11615 mRNA_3247 0.20 +0.3
207,984 + 11615 mRNA_3247 0.24 +1.4
208,012 + 11615 mRNA_3247 0.26 -0.6
208,307 + 11615 mRNA_3247 0.43 -1.2
208,320 + 11615 mRNA_3247 0.44 -0.3
208,328 + 11615 mRNA_3247 0.45 +0.4
208,356 + 11615 mRNA_3247 0.46 -0.9
208,471 + 11615 mRNA_3247 0.53 +0.1
208,489 + 11615 mRNA_3247 0.54 -0.2
208,490 + 11615 mRNA_3247 0.54 -0.2
208,599 - 11615 mRNA_3247 0.61 +1.2
208,609 + 11615 mRNA_3247 0.62 +0.2
208,770 + 11615 mRNA_3247 0.71 +0.2
208,773 - 11615 mRNA_3247 0.71 +0.7
208,930 + 11615 mRNA_3247 0.81 +1.4
208,973 - 11615 mRNA_3247 0.83 -0.4
209,234 + -0.3
209,383 - +0.5
209,590 - +0.0
209,591 + +0.5
209,646 - -0.5
209,760 + -2.3
209,764 - -1.2
209,766 - +0.1
209,772 - -0.3
209,806 + -0.8
209,829 - -0.1
209,894 + -0.0
209,916 + +0.2
210,021 + -0.1
210,028 - +0.7
210,028 - +0.3
210,176 - -0.6

Or see this region's nucleotide sequence