Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3298

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11665 and 11666 are separated by 394 nucleotides11666 and 11667 are separated by 653 nucleotides mRNA_3297: 11665 - K11173 ADHFE1 hydroxyacid-oxoacid transhydrogenase, at 326,501 to 328,972 11665 mRNA_3298: 11666 - Hypothetical Protein, at 329,367 to 333,104 11666 mRNA_3299: 11667 - K19704 PTC1 protein phosphatase PTC1, at 333,758 to 335,633 11667

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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328,710 + 11665 mRNA_3297 0.89 +0.0
329,419 - +0.7
330,273 - 11666 mRNA_3298 0.24 -2.9
330,342 - 11666 mRNA_3298 0.26 +0.2
330,893 - 11666 mRNA_3298 0.41 +0.2
331,464 - 11666 mRNA_3298 0.56 +0.3
331,510 + 11666 mRNA_3298 0.57 +0.1
331,916 + 11666 mRNA_3298 0.68 +0.4
331,928 - 11666 mRNA_3298 0.69 -0.4
332,089 + 11666 mRNA_3298 0.73 +1.1
332,241 + 11666 mRNA_3298 0.77 +0.2
332,713 - 11666 mRNA_3298 0.90 -0.8
332,945 + -0.2
333,119 + +0.2
333,290 + -1.4
333,294 + -0.2
333,298 + -0.9
333,309 - +1.8
333,392 - -0.8
333,399 + -1.2
333,591 + +0.3
333,875 + +0.4
333,998 + 11667 mRNA_3299 0.13 +1.3

Or see this region's nucleotide sequence