Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3317

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11684 and 11685 are separated by 257 nucleotides11685 and 11686 are separated by 919 nucleotides mRNA_3316: 11684 - K15223 UAF30, SPP27 upstream activation factor subunit UAF30, at 379,574 to 381,154 11684 mRNA_3317: 11685 - SUPERFAMILY--SSF52540, at 381,412 to 382,785 11685 mRNA_3318: 11686 - K14640 SLC20A, PIT solute carrier family 20 (sodium-dependent phosphate transporter), at 383,705 to 386,213 11686

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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380,581 + 11684 mRNA_3316 0.64 +0.3
380,669 - 11684 mRNA_3316 0.69 +1.7
380,839 + 11684 mRNA_3316 0.80 -0.6
380,840 - 11684 mRNA_3316 0.80 -0.4
380,871 - 11684 mRNA_3316 0.82 -0.3
381,127 - -0.6
381,403 + -0.2
381,760 + 11685 mRNA_3317 0.25 +1.8
381,860 + 11685 mRNA_3317 0.33 -0.1
381,872 + 11685 mRNA_3317 0.33 +0.4
382,024 - 11685 mRNA_3317 0.45 -0.1
382,024 + 11685 mRNA_3317 0.45 -0.0
382,279 + 11685 mRNA_3317 0.63 +0.6
382,282 - 11685 mRNA_3317 0.63 -0.4
382,609 + 11685 mRNA_3317 0.87 -0.1
382,739 - +0.3
383,029 + +0.5
383,161 - -0.3
383,190 + -0.1
383,311 - +0.0
383,460 - -0.6
383,467 + -0.3
383,471 - +0.2
383,471 + -0.1
383,476 - -0.0
383,483 + +0.2
383,484 - -1.1
383,487 - -0.1
383,490 + -0.0
383,498 + +0.9
383,510 - +0.6
383,522 + -1.6
383,574 + -1.7
383,672 + +0.1
383,679 + +0.8
383,688 - +1.0
383,701 - -0.0
383,743 + -0.1
383,778 + +0.9

Or see this region's nucleotide sequence