Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3358

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11725 and 11726 are separated by 792 nucleotides mRNA_3357: 11725 - BLAST dna-directed rna polymerase i subunit rpa43 [Rhod..., at 486,537 to 488,799 11725 mRNA_3358: 11726 - Hypothetical Protein, at 489,592 to 490,817 11726

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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488,683 + +0.2
488,768 - +0.6
489,074 - -1.1
489,273 + +0.0
489,400 + +0.1
489,426 - +0.9
489,504 - +0.4
490,052 + 11726 mRNA_3358 0.38 +0.1
490,261 - 11726 mRNA_3358 0.55 +0.8
490,321 + 11726 mRNA_3358 0.59 -0.7
490,438 - 11726 mRNA_3358 0.69 -0.2
491,150 + -0.5
491,186 + -0.2
491,410 + -0.1
491,675 + -1.2

Or see this region's nucleotide sequence