Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3384

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_3384: 11752 - K00963 UGP2, galU, galF UTP--glucose-1-phosphate uridylyltransferase, at 550,974 to 553,438 11752

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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550,202 + +0.8
550,220 + +1.5
550,686 - -1.3
550,802 + +1.1
550,805 + +0.8
550,806 - +0.6
550,813 + +0.3
550,824 - +0.9
550,834 + -1.1
550,839 + +0.2
550,858 + -0.3
553,560 + +0.5
554,046 + +0.0
554,060 + +0.0
554,186 + -0.2
554,333 + +0.6
554,339 - -0.8
554,345 - -0.5
554,345 + +0.1
554,346 + -0.4
554,347 + -0.2
554,351 - -1.1
554,361 + -0.2
554,362 + -0.6
554,369 - +1.0
554,389 - +0.6
554,390 + -0.4
554,400 - +0.3

Or see this region's nucleotide sequence