Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3469

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11836 and 11837 are separated by 114 nucleotides11837 and 11838 are separated by 219 nucleotides mRNA_3468: 11836 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 175,378 to 177,362 11836 mRNA_3469: 11837 - K07512 MECR, NRBF1 mitochondrial trans-2-enoyl-CoA reductase, at 177,477 to 179,110 11837 mRNA_3470: 11838 - KOG1492 C3H1-type Zn-finger protein, at 179,330 to 181,535 11838

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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176,525 + 11836 mRNA_3468 0.58 -0.5
176,533 - 11836 mRNA_3468 0.58 -0.8
176,541 + 11836 mRNA_3468 0.59 +0.6
176,592 - 11836 mRNA_3468 0.61 -0.2
176,629 + 11836 mRNA_3468 0.63 +0.8
177,041 - 11836 mRNA_3468 0.84 +1.0
177,292 - +0.8
177,436 - +0.9
177,447 + -0.0
177,483 + -2.3
177,494 - -0.8
177,585 - +1.5
177,590 - -0.7
177,653 + 11837 mRNA_3469 0.11 -1.0
177,809 - 11837 mRNA_3469 0.20 -0.0
177,908 + 11837 mRNA_3469 0.26 -0.7
177,910 - 11837 mRNA_3469 0.26 -0.0
178,026 - 11837 mRNA_3469 0.34 -0.3
178,115 + 11837 mRNA_3469 0.39 +0.4
178,347 - 11837 mRNA_3469 0.53 +0.3
178,533 - 11837 mRNA_3469 0.65 -0.1
178,533 + 11837 mRNA_3469 0.65 +0.1
178,545 + 11837 mRNA_3469 0.65 -0.1
178,794 + 11837 mRNA_3469 0.81 +0.4
179,240 + -0.3
179,362 + -1.2
179,366 - +0.3
179,389 + -0.6
179,390 - +1.0
179,519 - -0.6
179,554 + 11838 mRNA_3470 0.10 +0.0

Or see this region's nucleotide sequence