Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3490

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11857 and 11858 are separated by 208 nucleotides11858 and 11859 are separated by 594 nucleotides mRNA_3489: 11857 - BLAST NADH-ubiquinone oxidoreductase, 17.2kDa subunit [..., at 226,345 to 227,373 11857 mRNA_3490: 11858 - K05236 COPA, RET1 coatomer subunit alpha, at 227,582 to 231,954 11858 mRNA_3491: 11859 - K03007 RPB10, POLR2L DNA-directed RNA polymerases I, II, and III subunit RPABC5, at 232,549 to 233,056 11859

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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227,337 - -0.6
227,355 + +0.1
227,371 + +0.1
227,558 + +0.3
230,154 + 11858 mRNA_3490 0.59 +1.8
232,171 - -0.5
232,192 + -0.4

Or see this region's nucleotide sequence