Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3498

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11865 and 11866 are separated by 297 nucleotides11866 and 11867 are separated by 167 nucleotides mRNA_3497: 11865 - HMMPfam-Ubiquitin family-PF00240,ProSiteProfiles-Ubiquitin domain profile.-PS50053,SMART-Ubiquitin homologues-SM00213,SUPERFAMILY--SSF54236, at 241,064 to 241,942 11865 mRNA_3498: 11866 - K18064 ACR2 arsenical-resistance protein 2, at 242,240 to 242,927 11866 mRNA_3499: 11867 - K00231 PPOX, hemY oxygen-dependent protoporphyrinogen oxidase, at 243,095 to 244,996 11867

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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241,253 + 11865 mRNA_3497 0.22 +0.4
241,257 - 11865 mRNA_3497 0.22 -0.7
241,281 - 11865 mRNA_3497 0.25 -2.9
241,299 - 11865 mRNA_3497 0.27 +1.7
241,435 - 11865 mRNA_3497 0.42 -1.3
241,566 - 11865 mRNA_3497 0.57 +0.1
241,583 + 11865 mRNA_3497 0.59 -2.3
241,686 - 11865 mRNA_3497 0.71 -0.6
241,724 - 11865 mRNA_3497 0.75 +0.2
241,859 + +0.8
241,877 + -1.1
241,993 - -0.3
242,010 + +0.5
242,142 + +0.8
242,290 + +1.4
242,428 - 11866 mRNA_3498 0.27 +0.2
242,707 - 11866 mRNA_3498 0.68 +0.8
242,875 + +0.8

Or see this region's nucleotide sequence