Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3499

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11866 and 11867 are separated by 167 nucleotides11867 and 11868 are separated by 703 nucleotides mRNA_3498: 11866 - K18064 ACR2 arsenical-resistance protein 2, at 242,240 to 242,927 11866 mRNA_3499: 11867 - K00231 PPOX, hemY oxygen-dependent protoporphyrinogen oxidase, at 243,095 to 244,996 11867 mRNA_3500: 11868 - KOG2519 5'-3' exonuclease, at 245,700 to 248,074 11868

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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242,142 + +0.8
242,290 + +1.4
242,428 - 11866 mRNA_3498 0.27 +0.2
242,707 - 11866 mRNA_3498 0.68 +0.8
242,875 + +0.8
245,132 - -0.3
245,138 - +0.0
245,138 - +1.6
245,220 - +2.2
245,228 + -0.5
245,235 - +0.4
245,241 + +0.4
245,248 - +0.2
245,258 + -1.6

Or see this region's nucleotide sequence