Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3552

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11919 and 11920 are separated by 224 nucleotides11920 and 11921 are separated by 573 nucleotides mRNA_3551: 11919 - K10276 FBXL10_11, KDM2 F-box and leucine-rich repeat protein 10/11, at 28,216 to 30,545 11919 mRNA_3552: 11920 - K10884 XRCC6, KU70, G22P1 ATP-dependent DNA helicase 2 subunit 1, at 30,770 to 33,816 11920 mRNA_3553: 11921 - Hypothetical Protein, at 34,390 to 35,973 11921

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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29,896 + 11919 mRNA_3551 0.72 -0.7
30,066 - 11919 mRNA_3551 0.79 +0.3
30,500 - +0.9
30,650 + +0.2
30,653 - +0.7
30,661 + +1.4
30,789 + -1.8
30,895 + +0.7
30,908 - +0.6
30,975 - +0.3
31,065 + +0.6
31,190 - 11920 mRNA_3552 0.14 -0.1
31,377 + 11920 mRNA_3552 0.20 -0.2
31,813 - 11920 mRNA_3552 0.34 +1.4
31,830 - 11920 mRNA_3552 0.35 +0.5
32,247 + 11920 mRNA_3552 0.48 -0.1
32,411 - 11920 mRNA_3552 0.54 +0.1
32,553 + 11920 mRNA_3552 0.59 -0.7
32,637 - 11920 mRNA_3552 0.61 -0.6
32,849 + 11920 mRNA_3552 0.68 -0.1
32,851 + 11920 mRNA_3552 0.68 -0.8
32,966 - 11920 mRNA_3552 0.72 +0.4
33,128 + 11920 mRNA_3552 0.77 -0.3
33,274 - 11920 mRNA_3552 0.82 -0.4
33,308 + 11920 mRNA_3552 0.83 +1.5
33,563 + -1.0
33,870 + -0.9
33,881 + +0.9
33,881 + +0.6
33,897 + -0.1
33,904 + -0.2
34,025 - +0.1
34,032 + -0.9
34,307 + +0.1
34,332 + -0.5
34,357 - -0.3
34,398 + +0.6
34,500 + +1.1
34,728 - 11921 mRNA_3553 0.21 -1.0

Or see this region's nucleotide sequence