Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3588

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11955 and 11956 are separated by 244 nucleotides11956 and 11957 are separated by 485 nucleotides mRNA_3587: 11955 - K12836 U2AF1 splicing factor U2AF 35 kDa subunit, at 111,593 to 112,967 11955 mRNA_3588: 11956 - KOG0254 Predicted transporter (major facilitator superfamily), at 113,212 to 115,744 11956 mRNA_3589: 11957 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF101908,SUPERFAMILY--SSF81383, at 116,230 to 117,801 11957

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
113,196 - -0.9
113,198 + +0.9
113,676 - 11956 mRNA_3588 0.18 +0.9
114,061 + 11956 mRNA_3588 0.34 -0.1
114,081 + 11956 mRNA_3588 0.34 -0.1
114,154 - 11956 mRNA_3588 0.37 -2.0
114,174 + 11956 mRNA_3588 0.38 +0.8
114,322 - 11956 mRNA_3588 0.44 +0.8
114,393 + 11956 mRNA_3588 0.47 +1.0
114,461 + 11956 mRNA_3588 0.49 +0.6
114,508 - 11956 mRNA_3588 0.51 +0.2
114,528 + 11956 mRNA_3588 0.52 -0.1
114,540 + 11956 mRNA_3588 0.52 +0.5
114,555 - 11956 mRNA_3588 0.53 +0.2
114,555 - 11956 mRNA_3588 0.53 +0.1
114,794 + 11956 mRNA_3588 0.62 -0.3
114,901 + 11956 mRNA_3588 0.67 -1.6
115,197 - 11956 mRNA_3588 0.78 +0.8
115,790 - +0.2
116,215 + -1.2
116,230 - +0.2
116,234 + +0.6
116,372 + +0.1

Or see this region's nucleotide sequence