Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3629

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11996 and 11997 are separated by 84 nucleotides11997 and 11998 are separated by 660 nucleotides mRNA_3628: 11996 - K10849 ERCC1 DNA excision repair protein ERCC-1, at 202,614 to 203,898 11996 mRNA_3629: 11997 - Hypothetical Protein, at 203,983 to 204,971 11997 mRNA_3630: 11998 - Hypothetical Protein, at 205,632 to 206,590 11998

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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202,998 + 11996 mRNA_3628 0.30 +0.6
203,138 - 11996 mRNA_3628 0.41 +1.6
203,147 - 11996 mRNA_3628 0.41 -0.1
203,267 + 11996 mRNA_3628 0.51 +0.3
203,724 - 11996 mRNA_3628 0.86 -0.2
203,731 - 11996 mRNA_3628 0.87 +1.1
203,861 + +1.0
204,192 + 11997 mRNA_3629 0.21 -1.2
204,585 - 11997 mRNA_3629 0.61 -0.2
204,704 - 11997 mRNA_3629 0.73 +0.2
205,132 - -1.0
205,140 + -0.2
205,281 - +0.1
205,282 + -0.5
205,456 - +0.4
205,841 + 11998 mRNA_3630 0.22 -1.1

Or see this region's nucleotide sequence