Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3637

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12004 and 12005 are separated by 241 nucleotides12005 and 12006 are separated by 812 nucleotides mRNA_3636: 12004 - K03238 EIF2S2 translation initiation factor 2 subunit 2, at 217,154 to 218,587 12004 mRNA_3637: 12005 - KOG0730 AAA+-type ATPase, at 218,829 to 220,926 12005 mRNA_3638: 12006 - KOG1721 FOG Zn-finger, at 221,739 to 224,481 12006

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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218,719 - -2.0
219,696 + 12005 mRNA_3637 0.41 +0.4
219,880 - 12005 mRNA_3637 0.50 -0.2
219,889 - 12005 mRNA_3637 0.51 +0.1
220,441 - 12005 mRNA_3637 0.77 -0.1
220,753 - -1.6
220,905 + +0.2
221,175 + -1.8
221,604 - +0.3
221,609 + +0.0
221,625 + +0.2
221,629 + +0.2
221,631 + +0.2
221,639 + +0.2
221,639 + +0.2
221,648 + +1.3
221,652 + +0.1
221,803 + -0.3

Or see this region's nucleotide sequence