Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3794

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12161 and 12162 are separated by 178 nucleotides12162 and 12163 are separated by 229 nucleotides mRNA_3793: 12161 - K15528 FAAH fatty acid amide hydrolase, at 594,813 to 596,952 12161 mRNA_3794: 12162 - KOG4618 Uncharacterized conserved protein, at 597,131 to 597,697 12162 mRNA_3795: 12163 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 597,927 to 600,358 12163

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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596,346 - 12161 mRNA_3793 0.72 -0.4
596,488 - 12161 mRNA_3793 0.78 +1.1
596,506 + 12161 mRNA_3793 0.79 +0.4
596,714 + 12161 mRNA_3793 0.89 +0.3
596,767 + -0.0
596,908 - +0.7
596,924 + -0.1
597,206 - 12162 mRNA_3794 0.13 +0.5
597,617 - 12162 mRNA_3794 0.86 -0.4
597,767 - -0.4
597,776 - +0.1
597,782 - -0.9
597,792 - +1.3
597,792 - -0.3
597,798 - -0.3
598,078 - -1.3
598,090 + +0.4
598,534 + 12163 mRNA_3795 0.25 -0.1

Or see this region's nucleotide sequence