Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3892

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12260 and 12261 are separated by 270 nucleotides mRNA_3892: 12260 - Hypothetical Protein, at 837,987 to 839,368 12260 mRNA_3893: 12261 - K07375 TUBB tubulin beta, at 839,639 to 842,065 12261

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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837,414 - +1.1
837,492 + +0.4
837,535 + +0.2
837,553 - -2.0
837,601 + -1.3
837,635 + +0.6
837,694 + -0.3
837,730 - -0.2
837,763 + +0.1
837,791 + -0.4
838,026 + -1.1
838,207 - 12260 mRNA_3892 0.16 -0.8
838,352 + 12260 mRNA_3892 0.26 -0.1
838,358 - 12260 mRNA_3892 0.27 -1.2
838,439 - 12260 mRNA_3892 0.33 -0.1
838,442 + 12260 mRNA_3892 0.33 +1.7
838,461 + 12260 mRNA_3892 0.34 -1.9
838,801 - 12260 mRNA_3892 0.59 +2.4
838,911 - 12260 mRNA_3892 0.67 +0.2
838,921 + 12260 mRNA_3892 0.68 +0.5
839,189 + 12260 mRNA_3892 0.87 -0.2
839,215 - 12260 mRNA_3892 0.89 +0.6
839,218 + 12260 mRNA_3892 0.89 +0.8
839,255 + -0.5
839,642 - +0.7
839,682 + +1.1
839,911 + 12261 mRNA_3893 0.11 +0.8
840,039 + 12261 mRNA_3893 0.16 +0.1

Or see this region's nucleotide sequence