Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3938

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12305 and 12306 are separated by 167 nucleotides12306 and 12307 are separated by 334 nucleotides mRNA_3937: 12305 - KOG0692 Pentafunctional AROM protein, at 946,371 to 947,832 12305 mRNA_3938: 12306 - HMMPfam-Dioxygenase-PF00775,HMMPfam-Catechol dioxygenase N terminus-PF04444,SUPERFAMILY--SSF49482, at 948,000 to 949,684 12306 mRNA_3939: 12307 - K13954 yiaY alcohol dehydrogenase, at 950,019 to 951,719 12307

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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947,268 + 12305 mRNA_3937 0.61 -0.2
947,294 + 12305 mRNA_3937 0.63 +0.1
947,433 - 12305 mRNA_3937 0.73 +0.0
947,436 + 12305 mRNA_3937 0.73 +0.4
947,560 - 12305 mRNA_3937 0.81 +0.3
947,592 - 12305 mRNA_3937 0.84 +0.2
947,596 + 12305 mRNA_3937 0.84 -0.2
947,714 - +0.4
947,721 + +1.3
947,738 - +0.2
947,780 - -0.8
947,886 + +0.6
948,032 - +0.0
948,309 + 12306 mRNA_3938 0.18 -0.6
948,459 - 12306 mRNA_3938 0.27 -1.1
948,590 + 12306 mRNA_3938 0.35 +1.1
948,766 + 12306 mRNA_3938 0.45 +0.3
948,806 + 12306 mRNA_3938 0.48 -0.3
949,187 + 12306 mRNA_3938 0.70 +0.6
949,630 - -0.2
949,728 + -0.2
949,730 - +0.4
949,731 - +0.5
949,748 - +0.5
949,761 + -0.4
949,772 + -0.5
949,865 + -0.6
949,867 - -0.8
949,907 - +0.2
949,921 + -0.2
950,054 + +0.1
950,057 + +1.7
950,214 + 12307 mRNA_3939 0.11 -0.6
950,345 - 12307 mRNA_3939 0.19 +0.2

Or see this region's nucleotide sequence