Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4012

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12379 and 12380 are separated by 224 nucleotides12380 and 12381 are separated by 913 nucleotides mRNA_4011: 12379 - HMMPfam-Retinoic acid induced 16-like protein-PF10257, at 1,145,939 to 1,149,704 12379 mRNA_4012: 12380 - KOG2370 Cactin, at 1,149,929 to 1,152,487 12380 mRNA_4013: 12381 - HMMPfam-DJ-1/PfpI family-PF01965,HMMPfam-N-terminal domain of DJ-1_PfpI family-PF13587,SUPERFAMILY--SSF52317, at 1,153,401 to 1,154,671 12381

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,148,983 + 12379 mRNA_4011 0.81 -0.3
1,149,021 - 12379 mRNA_4011 0.82 +0.6
1,149,604 - -1.5
1,149,750 + -0.3
1,149,910 - +0.4
1,151,350 - 12380 mRNA_4012 0.56 +0.6
1,152,536 - -0.0
1,152,538 + +1.2
1,152,544 + +1.1
1,152,549 + +0.1
1,152,692 + -0.3
1,152,700 + +0.9
1,152,846 + +0.4
1,152,995 + +0.7
1,153,410 + -0.9

Or see this region's nucleotide sequence