Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4018

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12385 and 12386 are separated by 228 nucleotides12386 and 12387 are separated by 243 nucleotides mRNA_4017: 12385 - K13333 PLB lysophospholipase, at 1,168,260 to 1,170,390 12385 mRNA_4018: 12386 - K09500 CCT8 T-complex protein 1 subunit theta, at 1,170,619 to 1,173,012 12386 mRNA_4019: 12387 - K15116 SLC25A33_36, RIM2 solute carrier family 25, member 33/36, at 1,173,256 to 1,174,830 12387

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,170,136 - 12385 mRNA_4017 0.88 +0.9
1,170,338 + +0.7
1,170,407 + -0.6
1,170,574 + +0.4
1,173,037 - -0.3
1,173,043 + +0.3
1,173,051 - +0.3
1,173,173 + -0.5
1,173,201 + -0.9
1,173,203 + -0.6

Or see this region's nucleotide sequence