Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4028

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12395 and 12396 are separated by 585 nucleotides12396 and 12397 are separated by 182 nucleotides mRNA_4027: 12395 - K12863 CWC15 protein CWC15, at 1,188,764 to 1,189,753 12395 mRNA_4028: 12396 - K02328 POLD2 DNA polymerase delta subunit 2, at 1,190,339 to 1,192,414 12396 mRNA_4029: 12397 - HMMPfam-DASH complex subunit Hsk3 like-PF08227, at 1,192,597 to 1,192,970 12397

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,189,864 - -1.0
1,190,005 - -0.0
1,190,152 - -1.3
1,190,170 + -0.7
1,192,535 - -2.2
1,192,550 - +0.5
1,192,970 + +0.2
1,193,096 - -0.9
1,193,116 - +0.1

Or see this region's nucleotide sequence