Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4141

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12508 and 12509 are separated by 412 nucleotides12509 and 12510 are separated by 267 nucleotides mRNA_4140: 12508 - HMMPfam-Mitochondrial genome maintenance MGM101-PF06420, at 1,451,089 to 1,452,303 12508 mRNA_4141: 12509 - Hypothetical Protein, at 1,452,716 to 1,454,075 12509 mRNA_4142: 12510 - Hypothetical Protein, at 1,454,343 to 1,455,986 12510

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,452,447 - +0.1
1,452,453 - +1.2
1,452,454 - +0.1
1,452,456 + -0.7
1,452,457 - +0.2
1,452,457 - -0.5
1,452,471 + +0.0
1,452,476 - +0.1
1,452,483 + +1.8
1,452,483 - -2.5
1,452,492 + -2.0
1,452,496 - -0.5
1,452,500 + +0.1
1,452,520 - +1.4
1,452,613 - -0.1
1,452,631 - -0.1
1,452,641 + -0.2
1,452,645 - -0.2
1,452,653 + -1.2
1,452,657 - +0.4
1,452,797 + -1.1
1,452,799 - +0.3
1,452,806 + -0.0
1,452,817 + -0.3
1,452,820 + -0.3
1,452,948 - 12509 mRNA_4141 0.17 +1.0
1,452,965 - 12509 mRNA_4141 0.18 -0.8
1,452,974 + 12509 mRNA_4141 0.19 +2.5
1,452,975 - 12509 mRNA_4141 0.19 -0.2
1,452,980 - 12509 mRNA_4141 0.19 +0.4
1,452,987 + 12509 mRNA_4141 0.20 -0.5
1,452,991 - 12509 mRNA_4141 0.20 +0.6
1,453,099 - 12509 mRNA_4141 0.28 +0.3
1,453,817 - 12509 mRNA_4141 0.81 -0.3
1,454,097 - -0.5
1,454,161 - +0.5
1,454,163 - -1.6
1,454,184 - -1.1
1,454,302 + -0.1
1,454,347 + +0.8
1,454,356 + +0.7
1,454,361 + +0.9
1,454,467 + +0.6
1,454,481 - -0.0
1,454,595 - 12510 mRNA_4142 0.15 -2.6
1,454,613 + 12510 mRNA_4142 0.16 -0.1
1,454,626 + 12510 mRNA_4142 0.17 -0.1
1,454,634 + 12510 mRNA_4142 0.18 -0.4
1,454,746 + 12510 mRNA_4142 0.25 +0.0
1,454,764 - 12510 mRNA_4142 0.26 +1.5
1,454,917 - 12510 mRNA_4142 0.35 -0.5
1,455,042 - 12510 mRNA_4142 0.43 +0.3
1,455,057 + 12510 mRNA_4142 0.43 -0.1
1,455,066 - 12510 mRNA_4142 0.44 -0.4
1,455,071 + 12510 mRNA_4142 0.44 -0.4
1,455,075 + 12510 mRNA_4142 0.45 +0.2

Or see this region's nucleotide sequence