Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4152

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12519 and 12520 are separated by 453 nucleotides12520 and 12521 are separated by 829 nucleotides mRNA_4151: 12519 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,476,437 to 1,477,857 12519 mRNA_4152: 12520 - K15026 EIF2A translation initiation factor 2A, at 1,478,311 to 1,480,762 12520 mRNA_4153: 12521 - K20347 TMED2, EMP24 p24 family protein beta-1, at 1,481,592 to 1,482,556 12521

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,477,542 + 12519 mRNA_4151 0.78 +0.6
1,477,678 + 12519 mRNA_4151 0.87 +0.2
1,478,096 - +0.5
1,478,141 + -0.4
1,478,245 - +0.4
1,478,260 + +1.1
1,478,264 + +1.0
1,480,781 - +0.0
1,480,906 + +0.9
1,480,919 + -1.1
1,480,928 + +0.3
1,481,055 - -0.8
1,481,139 + -1.2
1,481,164 + +0.8
1,481,219 - -0.8
1,481,220 - +0.1
1,481,233 - +0.1
1,481,233 + +1.4
1,481,234 + -0.6
1,481,247 + -0.8
1,481,254 - -1.3
1,481,256 - -1.4

Or see this region's nucleotide sequence