Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4172

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12539 and 12540 are separated by 561 nucleotides mRNA_4171: 12539 - KOG2806 Chitinase, at 1,528,014 to 1,529,581 12539 mRNA_4172: 12540 - KOG1212 Amidases, at 1,530,143 to 1,531,631 12540

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,529,407 - 12539 mRNA_4171 0.89 +0.5
1,529,679 - +0.5
1,531,964 - -0.7

Or see this region's nucleotide sequence