Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4177

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12544 and 12545 are separated by 272 nucleotides12545 and 12546 are separated by 165 nucleotides mRNA_4176: 12544 - KOG4093 Uncharacterized conserved protein, at 1,542,041 to 1,542,823 12544 mRNA_4177: 12545 - K15356 VRG4, GONST1 GDP-mannose transporter, at 1,543,096 to 1,544,844 12545 mRNA_4178: 12546 - KOG1337 N-methyltransferase, at 1,545,010 to 1,546,616 12546

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,542,943 + +0.1
1,544,556 - 12545 mRNA_4177 0.83 -0.6
1,544,730 + -0.1
1,544,747 - +0.8
1,544,847 - +1.4
1,544,850 - -0.7
1,544,852 + +0.7
1,544,867 + +1.1
1,544,903 + +0.9
1,545,011 - +0.4
1,545,019 + +1.0
1,545,020 - +1.0
1,545,021 + -0.6
1,545,048 - -2.3
1,545,061 - +0.1
1,545,064 - +0.0
1,545,065 - +0.1
1,545,080 + -1.7
1,545,183 - 12546 mRNA_4178 0.11 +0.3
1,545,354 + 12546 mRNA_4178 0.21 +0.9
1,545,536 + 12546 mRNA_4178 0.33 -1.1
1,545,652 + 12546 mRNA_4178 0.40 +0.3
1,545,809 + 12546 mRNA_4178 0.50 +0.0

Or see this region's nucleotide sequence