Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4182

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12549 and 12550 are separated by 772 nucleotides12550 and 12551 are separated by 150 nucleotides mRNA_4181: 12549 - Hypothetical Protein, at 1,551,222 to 1,553,388 12549 mRNA_4182: 12550 - K13288 orn, REX2, REXO2 oligoribonuclease, at 1,554,161 to 1,555,375 12550 mRNA_4183: 12551 - K01497 ribA, RIB1 GTP cyclohydrolase II, at 1,555,526 to 1,557,851 12551

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,553,907 - +0.6
1,553,909 - +0.0
1,553,910 + +0.1
1,553,924 - -0.1
1,553,945 + +0.0
1,553,948 + +1.1
1,554,231 - +0.2
1,554,239 + +0.0
1,554,240 - +0.4
1,554,369 - 12550 mRNA_4182 0.17 -0.1
1,554,513 - 12550 mRNA_4182 0.29 +0.5
1,554,660 - 12550 mRNA_4182 0.41 -0.2
1,554,819 - 12550 mRNA_4182 0.54 +0.3
1,554,964 - 12550 mRNA_4182 0.66 -0.5
1,555,151 - 12550 mRNA_4182 0.81 +1.2
1,555,375 - -1.1

Or see this region's nucleotide sequence