Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4190

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12557 and 12558 are separated by 68 nucleotides mRNA_4189: 12557 - Hypothetical Protein, at 1,571,432 to 1,574,972 12557 mRNA_4190: 12558 - Hypothetical Protein, at 1,575,041 to 1,575,964 12558

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,575,198 - 12558 mRNA_4190 0.17 -0.5
1,575,209 - 12558 mRNA_4190 0.18 +1.1
1,575,519 - 12558 mRNA_4190 0.52 +0.4
1,575,650 - 12558 mRNA_4190 0.66 -0.6
1,575,969 + +0.1
1,576,067 - -0.4
1,576,091 - -0.5
1,576,126 + -0.4
1,576,177 + -0.0
1,576,220 - -0.2
1,576,222 - +1.0
1,576,230 + +0.1
1,576,234 + -0.5
1,576,302 - -0.2
1,576,343 + +0.2
1,576,349 + +0.5
1,576,351 - +0.3
1,576,356 + -0.1
1,576,364 - -0.1
1,576,365 - +1.0
1,576,369 + -0.1
1,576,380 + -1.4
1,576,389 - +1.0
1,576,390 - +0.1
1,576,429 + +0.1
1,576,436 - -0.4
1,576,488 + +0.7
1,576,496 - +0.2
1,576,555 - +0.5
1,576,559 - -0.2
1,576,577 - +0.0
1,576,582 + +0.3
1,576,584 - -0.4
1,576,586 + -0.6
1,576,587 + -0.1
1,576,588 + -0.5
1,576,589 + +0.2
1,576,590 - +1.8
1,576,590 - +0.4
1,576,592 - -0.1
1,576,599 + +1.1
1,576,600 - -0.2
1,576,600 + -0.2
1,576,601 + +0.1
1,576,607 - +0.8
1,576,608 + +1.3
1,576,608 + -1.3
1,576,609 - -0.5
1,576,618 + -1.0
1,576,644 - +0.5
1,576,645 - +1.7
1,576,646 + -0.3
1,576,647 - -0.6
1,576,651 + -0.4
1,576,667 - -0.6
1,576,670 + -0.4
1,576,683 - -0.0
1,576,691 + +0.3
1,576,697 + +0.2
1,576,710 - +0.7
1,576,716 - -0.1
1,576,721 - -0.5
1,576,723 - +0.6
1,576,752 + -0.3
1,576,757 + -0.4
1,576,766 + +0.6
1,576,780 - -0.4
1,576,785 + -0.4
1,576,788 - +0.4
1,576,791 - -1.5
1,576,817 - -0.3
1,576,860 - +1.2
1,576,874 + +0.3
1,576,883 + -0.8
1,576,895 - -0.4
1,576,901 - -0.2
1,576,918 - +0.1
1,576,926 - +0.2

Or see this region's nucleotide sequence