Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4388

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12755 and 12756 are separated by 459 nucleotides12756 and 12757 are separated by 358 nucleotides mRNA_4387: 12755 - HMMPfam-Ctf8-PF09696, at 71,691 to 72,315 12755 mRNA_4388: 12756 - KOG2084 Predicted histone tail methylase containing SET domain, at 72,775 to 74,031 12756 mRNA_4389: 12757 - K10735 GINS4, SLD5 GINS complex subunit 4, at 74,390 to 75,580 12757

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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72,184 + 12755 mRNA_4387 0.79 -0.8
72,219 + 12755 mRNA_4387 0.84 +0.0
72,832 - +0.4
73,016 - 12756 mRNA_4388 0.19 +1.9
73,056 - 12756 mRNA_4388 0.22 -1.0
73,699 - 12756 mRNA_4388 0.74 +0.3
73,962 - -0.5
73,973 + +0.4
74,259 - -1.1
74,274 - -0.6
74,276 - +0.3
74,285 - -0.1
74,289 + -0.3
74,334 + -0.6
74,341 - +0.2

Or see this region's nucleotide sequence