Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4451

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12818 and 12819 are separated by 989 nucleotides12819 and 12820 are separated by 370 nucleotides mRNA_4450: 12818 - Hypothetical Protein, at 212,523 to 213,518 12818 mRNA_4451: 12819 - K03355 APC8, CDC23 anaphase-promoting complex subunit 8, at 214,508 to 216,794 12819 mRNA_4452: 12820 - K13955 yogA zinc-binding alcohol dehydrogenase/oxidoreductase, at 217,165 to 218,716 12820

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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213,516 - -0.2
213,612 + +0.3
213,641 + +1.6
213,647 + -0.2
213,649 + +0.4
213,680 + -0.1
213,778 + +0.3
213,781 - -0.3
213,794 - +0.3
213,806 + +0.9
213,810 - +0.1
213,813 - -0.3
213,813 + +0.6
213,937 - +0.3
213,944 + -0.1
213,961 + +0.0
213,969 + +0.9
216,862 - +2.3
216,889 + +0.1
216,986 + +0.1
216,997 - -0.5
217,001 - -0.8
217,018 + -0.0
217,026 - -1.6
217,032 + -0.7
217,036 - +0.0
217,192 - -0.2
217,214 + +0.2
217,303 + -0.1
217,331 - 12820 mRNA_4452 0.11 +0.0

Or see this region's nucleotide sequence