Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4501

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12868 and 12869 are separated by 172 nucleotides12869 and 12870 are separated by 342 nucleotides mRNA_4500: 12868 - K14304 NUP85 nuclear pore complex protein Nup85, at 327,724 to 330,564 12868 mRNA_4501: 12869 - Hypothetical Protein, at 330,737 to 332,545 12869 mRNA_4502: 12870 - KOG3720 Lysosomal & prostatic acid phosphatases, at 332,888 to 334,792 12870

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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329,780 - 12868 mRNA_4500 0.72 -0.9
329,795 - 12868 mRNA_4500 0.73 -1.0
330,197 - 12868 mRNA_4500 0.87 +0.5
330,361 + +0.6
330,364 - +0.6
330,476 - +0.3
330,512 + +1.2
330,523 + -1.4
330,644 + +0.3
330,655 - -0.7
330,674 + -0.1
331,045 + 12869 mRNA_4501 0.17 +0.1
331,223 - 12869 mRNA_4501 0.27 -1.1
331,664 - 12869 mRNA_4501 0.51 +0.6
331,768 - 12869 mRNA_4501 0.57 +1.3
331,787 + 12869 mRNA_4501 0.58 +0.4
331,792 - 12869 mRNA_4501 0.58 +0.7
332,032 + 12869 mRNA_4501 0.72 -0.4
332,078 - 12869 mRNA_4501 0.74 -0.4
332,090 + 12869 mRNA_4501 0.75 -0.9
332,400 + +0.3
332,417 + -0.0
332,537 - +0.4
332,894 - +1.8
333,124 - 12870 mRNA_4502 0.12 +1.7
333,317 - 12870 mRNA_4502 0.23 -0.0
333,459 - 12870 mRNA_4502 0.30 +0.5

Or see this region's nucleotide sequence