Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4508

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12875 and 12876 are separated by 308 nucleotides12876 and 12877 are separated by 122 nucleotides mRNA_4507: 12875 - K13953 adhP alcohol dehydrogenase, propanol-preferring, at 341,056 to 342,749 12875 mRNA_4508: 12876 - KOG2263 Methionine synthase II (cobalamin-independent), at 343,058 to 345,136 12876 mRNA_4509: 12877 - HMMPfam-Ctr copper transporter family-PF04145, at 345,259 to 347,501 12877

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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342,351 - 12875 mRNA_4507 0.76 -1.0
342,360 - 12875 mRNA_4507 0.77 -0.2
342,816 + +1.0
342,834 + -0.3
342,864 + -0.2
342,897 + -0.9
342,922 - -0.5
343,154 - -0.1
343,315 - 12876 mRNA_4508 0.12 +1.3
343,593 + 12876 mRNA_4508 0.26 +0.5
343,594 - 12876 mRNA_4508 0.26 +0.3
343,745 + 12876 mRNA_4508 0.33 -0.1
343,858 - 12876 mRNA_4508 0.38 -0.5
344,101 - 12876 mRNA_4508 0.50 +0.3
344,162 - 12876 mRNA_4508 0.53 +0.5
344,266 + 12876 mRNA_4508 0.58 +1.7
344,328 - 12876 mRNA_4508 0.61 -1.8
344,631 + 12876 mRNA_4508 0.76 -1.1
344,860 - 12876 mRNA_4508 0.87 -0.2
344,893 + 12876 mRNA_4508 0.88 +0.3
345,017 - +0.3
345,027 - -0.2
345,154 - -0.8
345,166 - +0.4
345,169 + -0.5
345,192 - +1.4
345,196 - -0.7
345,208 - -0.2
345,496 - 12877 mRNA_4509 0.11 +1.4

Or see this region's nucleotide sequence