Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4537

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12904 and 12905 are separated by 375 nucleotides12905 and 12906 are separated by 139 nucleotides mRNA_4536: 12904 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 404,129 to 405,942 12904 mRNA_4537: 12905 - KOG0472 Leucine-rich repeat protein, at 406,318 to 409,422 12905 mRNA_4538: 12906 - KOG2112 Lysophospholipase, at 409,562 to 410,663 12906

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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405,396 + 12904 mRNA_4536 0.70 +0.5
405,893 + +0.5
405,898 - +1.4
405,907 + +0.6
406,069 + +0.5
406,200 + -0.8
406,200 + -0.2
406,350 + -0.3
406,800 + 12905 mRNA_4537 0.16 -0.1
407,077 + 12905 mRNA_4537 0.24 -0.2
407,205 - 12905 mRNA_4537 0.29 +0.3
407,648 - 12905 mRNA_4537 0.43 -2.1
407,662 + 12905 mRNA_4537 0.43 -0.0
407,900 - 12905 mRNA_4537 0.51 -1.7
408,089 + 12905 mRNA_4537 0.57 +0.8
408,683 + 12905 mRNA_4537 0.76 -0.6
408,686 - 12905 mRNA_4537 0.76 -0.8
408,879 + 12905 mRNA_4537 0.82 +1.2
409,202 - -0.1
409,398 - +0.3

Or see this region's nucleotide sequence