Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4545

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12912 and 12913 are separated by 708 nucleotides12913 and 12914 are separated by 286 nucleotides mRNA_4544: 12912 - K01251 E3.3.1.1, ahcY adenosylhomocysteinase, at 424,792 to 427,173 12912 mRNA_4545: 12913 - K11088 SNRPD3, SMD3 small nuclear ribonucleoprotein D3, at 427,882 to 428,716 12913 mRNA_4546: 12914 - K16576 ACTR10, ARP11 actin-related protein 10, at 429,003 to 431,242 12914

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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427,238 + -1.0
427,373 + +1.2
427,522 - +1.3
427,543 - -0.2
428,848 - -0.3
428,895 + +0.2

Or see this region's nucleotide sequence