Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4603

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12970 and 12971 are separated by 406 nucleotides12971 and 12972 are separated by 600 nucleotides mRNA_4602: 12970 - HMMPfam-NYN domain-PF01936, at 561,866 to 562,949 12970 mRNA_4603: 12971 - K07119 K07119 uncharacterized protein, at 563,356 to 565,108 12971 mRNA_4604: 12972 - K10747 LIG1 DNA ligase 1, at 565,709 to 567,987 12972

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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562,571 - 12970 mRNA_4602 0.65 -1.1
562,709 + 12970 mRNA_4602 0.78 -0.2
562,733 + 12970 mRNA_4602 0.80 -0.2
562,831 + 12970 mRNA_4602 0.89 -1.5
562,857 + -0.1
562,865 + -1.5
562,870 + -0.9
562,871 + -2.0
563,143 - +1.1
563,151 + -0.2
563,160 + +1.3
563,180 + +0.9
563,326 - +0.5
563,464 - -0.1
564,002 + 12971 mRNA_4603 0.37 +1.6
564,033 + 12971 mRNA_4603 0.39 +0.4
564,050 + 12971 mRNA_4603 0.40 +0.3
564,182 + 12971 mRNA_4603 0.47 +0.2
564,195 + 12971 mRNA_4603 0.48 +0.6
564,624 - 12971 mRNA_4603 0.72 +0.9
564,626 - 12971 mRNA_4603 0.72 -1.3
564,635 + 12971 mRNA_4603 0.73 +0.5
564,751 - 12971 mRNA_4603 0.80 +0.5
564,871 + 12971 mRNA_4603 0.86 -0.6
564,925 + 12971 mRNA_4603 0.90 +0.4
564,925 + 12971 mRNA_4603 0.90 -0.3
565,045 - +1.7
565,049 + +3.1
565,054 - +0.3
565,063 + -0.4
565,196 - -0.3
565,197 - -1.8
565,232 + +1.4
565,250 + +1.4
565,255 + -0.9
565,276 - -1.4
565,282 + +0.4
565,285 + -0.1
565,288 - -0.7
565,298 + +0.7
565,315 + +0.0
565,324 + +0.4
565,329 + -1.7
565,334 - -0.4
565,337 - -0.9
565,362 + +0.3
565,371 + +0.3
565,373 - +0.7
565,377 - +1.2
565,396 + +0.0
565,405 - +0.1
565,466 - +0.2
565,473 + -0.8
565,481 - -0.3
565,482 - -0.1
565,487 + -0.2
565,491 - -0.7
565,502 - +0.2
565,504 - -0.2
565,506 + +0.3
565,508 - +0.5
565,513 + -0.2
565,518 + +0.4
565,522 + -4.3
565,528 + +0.5
565,534 + +0.6
565,535 - +0.2
565,541 - +1.1
565,549 + +0.1
565,551 - -1.5
565,555 + +0.1
565,592 - -0.3
565,600 + -0.5
565,600 - +0.3
565,603 - +0.6
565,615 - +0.2
565,617 + -0.2
565,641 + +0.3
565,644 + -0.3
565,728 + +0.4
565,755 + -0.7

Or see this region's nucleotide sequence