Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4648

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13015 and 13016 are separated by 96 nucleotides13016 and 13017 are separated by 208 nucleotides mRNA_4647: 13015 - K03032 PSMD1, RPN2 26S proteasome regulatory subunit N2, at 684,637 to 688,290 13015 mRNA_4648: 13016 - HMMPfam-Mediator complex subunit Med5-PF08689, at 688,387 to 691,863 13016 mRNA_4649: 13017 - K03934 NDUFS1 NADH dehydrogenase (ubiquinone) Fe-S protein 1, at 692,072 to 694,733 13017

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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687,716 + 13015 mRNA_4647 0.84 -0.2
688,331 - +0.6
688,360 - -0.0
688,453 - -0.2
688,631 - -1.3
689,350 - 13016 mRNA_4648 0.28 -0.3
689,370 - 13016 mRNA_4648 0.28 +0.4
690,116 - 13016 mRNA_4648 0.50 -0.9
690,287 - 13016 mRNA_4648 0.55 -0.1
690,394 + 13016 mRNA_4648 0.58 -0.8
690,441 + 13016 mRNA_4648 0.59 +0.8
690,515 + 13016 mRNA_4648 0.61 -0.2
690,561 + 13016 mRNA_4648 0.63 -0.5
691,152 - 13016 mRNA_4648 0.80 +0.5
691,270 + 13016 mRNA_4648 0.83 -0.9
691,311 - 13016 mRNA_4648 0.84 +0.5
691,338 + 13016 mRNA_4648 0.85 -0.3
691,496 + 13016 mRNA_4648 0.89 +0.0
691,623 + +0.6
691,888 - -0.4
692,073 - -0.2
692,077 - +0.0
692,232 + -0.2

Or see this region's nucleotide sequence