Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4666

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13033 and 13034 are separated by 145 nucleotides13034 and 13035 are separated by 480 nucleotides mRNA_4665: 13033 - K02332 POLG1, MIP1 DNA polymerase gamma 1, at 727,928 to 732,665 13033 mRNA_4666: 13034 - KOG3429 Predicted peptidyl-tRNA hydrolase, at 732,811 to 733,473 13034 mRNA_4667: 13035 - HMMPfam-Acetyltransferase (GNAT) domain-PF13302,SUPERFAMILY--SSF55729, at 733,954 to 735,722 13035

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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732,402 - -1.8
732,718 - -0.5
732,744 + -1.1
732,761 + -0.5
732,912 + 13034 mRNA_4666 0.15 +0.8
733,147 - 13034 mRNA_4666 0.51 -0.8
733,755 + -0.5
733,933 - +0.6
734,000 - -0.8
734,030 + +0.2

Or see this region's nucleotide sequence