Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4739

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13106 and 13107 are separated by 459 nucleotides13107 and 13108 are separated by 646 nucleotides mRNA_4738: 13106 - K01738 cysK cysteine synthase A, at 891,331 to 893,508 13106 mRNA_4739: 13107 - K06883 K06883 uncharacterized protein, at 893,968 to 895,440 13107 mRNA_4740: 13108 - Hypothetical Protein, at 896,087 to 896,524 13108

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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892,994 + 13106 mRNA_4738 0.76 +0.6
893,065 + 13106 mRNA_4738 0.80 -0.1
893,547 - -0.5
893,814 + -0.4
893,838 - -0.0
893,843 - +0.5
893,856 + -1.0
893,857 + -0.1
893,867 - -0.0
893,987 - +0.8
895,611 - +0.6
895,611 - -1.2
895,618 + -0.6
895,907 + +1.4
896,044 + -0.3
896,046 - -0.5
896,046 - -0.6
896,055 - +0.1
896,176 - 13108 mRNA_4740 0.20 +0.5
896,209 + 13108 mRNA_4740 0.28 +0.4
896,302 + 13108 mRNA_4740 0.49 -0.4
896,308 + 13108 mRNA_4740 0.50 -0.2
896,314 + 13108 mRNA_4740 0.52 +0.5
896,424 - 13108 mRNA_4740 0.77 +0.1

Or see this region's nucleotide sequence