Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4743

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_4743: 13111 - BLAST Nucleolar protein 4 [Choanephora cucurbitarum], at 903,748 to 904,899 13111

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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902,881 - +0.5
903,021 + +1.1
903,142 - -0.9
903,280 - -0.8
903,340 + +0.9
903,354 - +0.7
903,383 + -1.2
903,397 + -1.8
903,401 - -0.9
903,403 + +0.5
903,467 - -0.8
903,574 + -0.8
903,730 + -0.0
903,738 + -0.0
903,996 - 13111 mRNA_4743 0.22 -0.3
904,032 - 13111 mRNA_4743 0.25 -0.0
904,187 + 13111 mRNA_4743 0.38 +0.8
904,294 - 13111 mRNA_4743 0.47 -0.5
904,323 - 13111 mRNA_4743 0.50 -0.5
905,131 + +0.6
905,212 - +0.7
905,451 + +0.7
905,468 - -0.9
905,469 - +1.3
905,627 - -0.2
905,631 + +0.8
905,631 - -0.8
905,748 + -1.6
905,794 + +0.5
905,801 + -0.2
905,851 - +0.3
905,856 - -0.3
905,865 + +0.3
905,869 - -0.5
905,870 - -0.3
905,883 - +0.2
905,896 - -1.1

Or see this region's nucleotide sequence