Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4853

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13220 and 13221 are separated by 261 nucleotides13221 and 13222 are separated by 545 nucleotides mRNA_4852: 13220 - Hypothetical Protein, at 1,149,636 to 1,152,739 13220 mRNA_4853: 13221 - Hypothetical Protein, at 1,153,001 to 1,154,455 13221 mRNA_4854: 13222 - ProSiteProfiles-BTB domain profile.-PS50097, at 1,155,001 to 1,156,417 13222

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,152,634 - +2.1
1,152,757 - +0.3
1,152,766 + -0.1
1,153,048 + +0.6
1,153,077 + +0.2
1,153,140 + -0.1
1,153,205 + 13221 mRNA_4853 0.14 +0.4
1,153,274 - 13221 mRNA_4853 0.19 +0.1
1,153,457 - 13221 mRNA_4853 0.31 +1.0
1,154,049 - 13221 mRNA_4853 0.72 +0.9
1,154,240 + 13221 mRNA_4853 0.85 -1.1
1,154,364 - -0.2
1,154,364 - -0.4
1,154,884 - -1.0
1,154,885 + -0.4
1,155,080 - +0.5

Or see this region's nucleotide sequence