Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4883

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13250 and 13251 are separated by 301 nucleotides13251 and 13252 are separated by 481 nucleotides mRNA_4882: 13250 - Hypothetical Protein, at 1,215,756 to 1,216,865 13250 mRNA_4883: 13251 - HMMPfam-Uncharacterised protein family (UPF0203)-PF05254, at 1,217,167 to 1,217,657 13251 mRNA_4884: 13252 - K07555 ATPeAF1, ATPAF1, ATP11 ATP synthase mitochondrial F1 complex assembly factor 1, at 1,218,139 to 1,219,355 13252

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
1,216,341 - 13250 mRNA_4882 0.53 +0.5
1,216,360 + 13250 mRNA_4882 0.54 +0.1
1,216,478 - 13250 mRNA_4882 0.65 -0.1
1,216,479 - 13250 mRNA_4882 0.65 +0.8
1,216,479 - 13250 mRNA_4882 0.65 +0.7
1,216,511 + 13250 mRNA_4882 0.68 +0.2
1,216,513 - 13250 mRNA_4882 0.68 -0.4
1,216,516 - 13250 mRNA_4882 0.68 -0.4
1,216,631 + 13250 mRNA_4882 0.79 +0.8
1,216,648 + 13250 mRNA_4882 0.80 -0.7
1,216,898 - +0.6
1,217,082 - +0.8
1,217,083 - -0.2
1,217,088 - -0.7
1,217,088 + +0.6
1,217,799 + +1.3
1,217,817 + -0.3
1,217,832 + +0.0
1,218,095 - +0.7
1,218,118 + +1.1

Or see this region's nucleotide sequence