Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4969

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13336 and 13337 are separated by 81 nucleotides13337 and 13338 are separated by 426 nucleotides mRNA_4968: 13336 - KOG4464 Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion), at 1,432,474 to 1,435,003 13336 mRNA_4969: 13337 - K20456 OSBP oxysterol-binding protein 1, at 1,435,085 to 1,439,408 13337 mRNA_4970: 13338 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 1,439,835 to 1,441,343 13338

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,434,237 - 13336 mRNA_4968 0.70 +2.2
1,434,656 - 13336 mRNA_4968 0.86 +0.4
1,434,701 + 13336 mRNA_4968 0.88 +1.6
1,434,840 - +1.1
1,434,956 + +1.4
1,435,405 - -0.2
1,435,812 + 13337 mRNA_4969 0.17 +0.3
1,435,884 + 13337 mRNA_4969 0.18 +2.1
1,435,982 - 13337 mRNA_4969 0.21 +0.5
1,436,141 + 13337 mRNA_4969 0.24 -0.8
1,436,510 + 13337 mRNA_4969 0.33 +1.5
1,436,588 + 13337 mRNA_4969 0.35 -0.0
1,436,631 + 13337 mRNA_4969 0.36 -0.2
1,436,659 - 13337 mRNA_4969 0.36 -0.9
1,436,933 + 13337 mRNA_4969 0.43 -1.3
1,437,204 + 13337 mRNA_4969 0.49 -0.6
1,437,365 - 13337 mRNA_4969 0.53 +0.4
1,437,436 - 13337 mRNA_4969 0.54 -0.4
1,437,509 - 13337 mRNA_4969 0.56 +1.4
1,437,960 + 13337 mRNA_4969 0.66 -0.8
1,438,299 + 13337 mRNA_4969 0.74 +0.4
1,438,372 - 13337 mRNA_4969 0.76 +0.0
1,438,378 + 13337 mRNA_4969 0.76 -0.1
1,438,812 - 13337 mRNA_4969 0.86 +0.4
1,438,816 + 13337 mRNA_4969 0.86 -0.8
1,439,114 - -0.2
1,439,117 + +0.4
1,439,128 + +0.7
1,439,137 + +0.5
1,439,179 + -0.4
1,439,280 + -1.2
1,439,280 + +0.3
1,439,351 - +0.8
1,439,415 - -1.4
1,439,564 + -0.0
1,439,606 + +0.1
1,439,721 + -0.1
1,439,838 + +0.5
1,439,865 + +1.2
1,440,294 - 13338 mRNA_4970 0.30 -1.1

Or see this region's nucleotide sequence