Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5049

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13416 and 13417 are separated by 192 nucleotides13417 and 13418 are separated by 246 nucleotides mRNA_5048: 13416 - HMMPfam-Animal haem peroxidase-PF03098,ProSiteProfiles-Animal heme peroxidase superfamily profile.-PS50292,SUPERFAMILY--SSF48113, at 1,632,775 to 1,633,418 13416 mRNA_5049: 13417 - HMMPfam-Cytochrome P450-PF00067,SUPERFAMILY--SSF48264, at 1,633,611 to 1,634,725 13417 mRNA_5050: 13418 - Hypothetical Protein, at 1,634,972 to 1,635,708 13418

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,632,815 - -1.5
1,632,848 - 13416 mRNA_5048 0.11 -0.3
1,632,932 - 13416 mRNA_5048 0.24 -1.3
1,633,130 + 13416 mRNA_5048 0.55 +0.6
1,633,371 - +0.8
1,634,580 - 13417 mRNA_5049 0.87 -0.3
1,634,712 - +0.2
1,634,750 + +0.3
1,634,753 + -0.4
1,634,913 + +0.3
1,634,917 - -0.2
1,634,962 - +0.2
1,635,029 - -0.2
1,635,056 - 13418 mRNA_5050 0.11 -0.7
1,635,181 - 13418 mRNA_5050 0.28 +0.0
1,635,191 + 13418 mRNA_5050 0.30 +0.4
1,635,228 + 13418 mRNA_5050 0.35 +0.1
1,635,299 + 13418 mRNA_5050 0.44 +0.7
1,635,308 + 13418 mRNA_5050 0.46 +0.3
1,635,332 - 13418 mRNA_5050 0.49 +0.1
1,635,352 - 13418 mRNA_5050 0.52 +0.3
1,635,444 + 13418 mRNA_5050 0.64 -0.7
1,635,453 + 13418 mRNA_5050 0.65 -0.2
1,635,559 + 13418 mRNA_5050 0.80 -0.2
1,635,593 + 13418 mRNA_5050 0.84 +0.3
1,635,606 + 13418 mRNA_5050 0.86 +0.0
1,635,667 - +0.1

Or see this region's nucleotide sequence