Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5145

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13512 and 13513 are separated by 449 nucleotides mRNA_5144: 13512 - BLAST putative mit domain-containing protein [Erysiphe neca..., at 8,147 to 8,373 13512 mRNA_5145: 13513 - Hypothetical Protein, at 8,823 to 11,115 13513

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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7,889 - -0.1
8,019 - -0.1
8,069 + +0.3
8,108 + -1.2
8,267 - 13512 mRNA_5144 0.53 +0.9
8,396 + +0.7
8,651 + +1.3
8,952 - +1.2
9,234 + 13513 mRNA_5145 0.18 +1.2
9,549 + 13513 mRNA_5145 0.32 +2.3
9,552 - 13513 mRNA_5145 0.32 -0.4
9,605 + 13513 mRNA_5145 0.34 +1.1
9,660 + 13513 mRNA_5145 0.37 +1.5
9,687 - 13513 mRNA_5145 0.38 +1.3
9,968 - 13513 mRNA_5145 0.50 +0.4
10,059 + 13513 mRNA_5145 0.54 +0.8
10,092 - 13513 mRNA_5145 0.55 +0.5
10,104 + 13513 mRNA_5145 0.56 +1.1
10,524 + 13513 mRNA_5145 0.74 +1.3
10,550 + 13513 mRNA_5145 0.75 +0.3
10,973 - +0.6
11,386 + +0.9
11,841 - +2.2
11,970 - +0.8
11,980 + -0.1
12,113 + +1.1

Or see this region's nucleotide sequence