Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5204

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13571 and 13572 are separated by 401 nucleotides mRNA_5203: 13571 - K06709 KDM4, JMJD2, JHDM3 jumonji domain-containing protein 2, at 141,412 to 145,870 13571 mRNA_5204: 13572 - Hypothetical Protein, at 146,272 to 147,091 13572

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
145,322 - 13571 mRNA_5203 0.88 +1.1
145,382 - 13571 mRNA_5203 0.89 +1.0
145,437 + -0.3
145,438 - +0.2
145,444 - +0.6
145,468 - -0.9
145,477 + -0.1
145,499 - +0.4
145,499 - +0.5
145,506 + -0.6
145,520 + -0.8
145,597 + +0.4
145,602 - -0.5
145,627 + +0.1
145,637 + -0.2
145,728 - -0.7
145,739 - +1.5
145,744 - -0.4
145,753 + -0.2
145,765 - -0.4
145,779 + -1.3
145,924 - +1.8
145,924 + -1.0
145,926 - -0.1
145,935 + -0.9
145,938 - -0.2
146,057 + +0.6
146,060 - +0.4
146,075 - -0.1
146,106 + -0.4
146,273 - +0.5
146,850 - 13572 mRNA_5204 0.70 -0.1
147,662 + -1.5
147,890 - +0.3

Or see this region's nucleotide sequence