Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5271

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13638 and 13639 are separated by 534 nucleotides13639 and 13640 are separated by 216 nucleotides mRNA_5270: 13638 - Hypothetical Protein, at 326,289 to 326,690 13638 mRNA_5271: 13639 - K11841 USP10, UBP3 ubiquitin carboxyl-terminal hydrolase 10, at 327,225 to 330,329 13639 mRNA_5272: 13640 - K02731 PSMA7 20S proteasome subunit alpha 4, at 330,546 to 332,091 13640

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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326,340 + 13638 mRNA_5270 0.13 +0.5
326,342 - 13638 mRNA_5270 0.13 -0.1
326,345 - 13638 mRNA_5270 0.14 -1.1
326,481 + 13638 mRNA_5270 0.48 -0.2
326,644 + 13638 mRNA_5270 0.88 -0.4
326,646 - 13638 mRNA_5270 0.89 -2.1
326,656 - -0.0
326,657 + +0.3
326,660 + -1.0
326,688 - -0.6
326,694 + -1.4
326,708 + +2.1
326,713 - +1.2
326,724 + +0.6
326,732 - +0.5
326,803 + -0.2
326,806 + -0.7
326,838 + +0.1
326,878 + +0.1
326,884 + -0.1
326,885 + -0.7
327,010 - +0.2
327,011 - -0.3
327,065 + +0.2
327,111 - -0.9
327,420 - -1.2
327,443 + -0.6
328,034 + 13639 mRNA_5271 0.26 -0.8
329,179 - 13639 mRNA_5271 0.63 +0.1
329,189 - 13639 mRNA_5271 0.63 -1.6
329,771 - 13639 mRNA_5271 0.82 -0.8
330,385 + +0.3
330,972 - 13640 mRNA_5272 0.28 +1.4

Or see this region's nucleotide sequence