Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5320

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13687 and 13688 are separated by 345 nucleotides13688 and 13689 are separated by 423 nucleotides mRNA_5319: 13687 - HMMPfam-Plasma-membrane choline transporter-PF04515, at 446,863 to 449,105 13687 mRNA_5320: 13688 - K03038 PSMD7, RPN8 26S proteasome regulatory subunit N8, at 449,451 to 450,740 13688 mRNA_5321: 13689 - K11108 RCL1 RNA 3'-terminal phosphate cyclase-like protein, at 451,164 to 452,723 13689

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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448,550 + 13687 mRNA_5319 0.75 -0.6
448,630 + 13687 mRNA_5319 0.79 +0.2
448,736 + 13687 mRNA_5319 0.84 +0.2
448,855 + 13687 mRNA_5319 0.89 +0.6
448,882 + +0.7
448,891 - +0.3
448,912 + -0.0
449,162 - +0.1
449,172 - +0.6
449,176 - +0.1
449,177 + +0.3
449,177 - +0.4
449,198 + +1.6
450,787 + +0.4
450,829 + -0.1
450,960 + -0.1
450,994 + -3.7
451,076 - +0.2
451,107 - +0.3
451,109 - +0.3
451,120 - +0.3
451,121 + +0.8

Or see this region's nucleotide sequence