Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5425

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13792 and 13793 are separated by 146 nucleotides13793 and 13794 are separated by 463 nucleotides mRNA_5424: 13792 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 68,468 to 70,424 13792 mRNA_5425: 13793 - K12735 PPIL4 peptidyl-prolyl cis-trans isomerase-like 4, at 70,571 to 72,264 13793 mRNA_5426: 13794 - K06944 K06944 uncharacterized protein, at 72,728 to 74,932 13794

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
69,709 + 13792 mRNA_5424 0.63 +0.4
69,757 + 13792 mRNA_5424 0.66 -0.3
69,820 - 13792 mRNA_5424 0.69 +0.4
69,873 + 13792 mRNA_5424 0.72 -0.6
69,891 + 13792 mRNA_5424 0.73 +1.3
70,010 + 13792 mRNA_5424 0.79 +1.0
70,045 - 13792 mRNA_5424 0.81 +0.6
70,153 + 13792 mRNA_5424 0.86 +1.1
70,186 - 13792 mRNA_5424 0.88 +0.9
70,186 - 13792 mRNA_5424 0.88 -0.4
70,234 + -2.6
70,343 - +0.1
70,343 + +0.4
70,494 - -0.7
70,512 - +0.3
70,535 + +1.5
70,724 - +0.6
70,810 - 13793 mRNA_5425 0.14 +1.3
70,925 - 13793 mRNA_5425 0.21 +0.1
71,048 - 13793 mRNA_5425 0.28 +1.2
72,379 - +1.3
72,650 + +0.7
72,855 + -0.8
72,976 - 13794 mRNA_5426 0.11 -0.1
73,064 - 13794 mRNA_5426 0.15 +0.1
73,104 - 13794 mRNA_5426 0.17 +0.4
73,138 + 13794 mRNA_5426 0.19 +0.4
73,147 + 13794 mRNA_5426 0.19 -0.9
73,149 - 13794 mRNA_5426 0.19 +0.8
73,220 - 13794 mRNA_5426 0.22 +0.4

Or see this region's nucleotide sequence