Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5488

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13855 and 13856 are separated by 261 nucleotides13856 and 13857 are separated by 454 nucleotides mRNA_5487: 13855 - HMMPfam-Protein kinase domain-PF00069,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 213,824 to 214,622 13855 mRNA_5488: 13856 - K01078 E3.1.3.2 acid phosphatase, at 214,884 to 216,932 13856 mRNA_5489: 13857 - KOG1263 Multicopper oxidases, at 217,387 to 219,494 13857

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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214,062 - 13855 mRNA_5487 0.30 +0.8
214,102 + 13855 mRNA_5487 0.35 -1.4
214,135 + 13855 mRNA_5487 0.39 -0.6
214,201 + 13855 mRNA_5487 0.47 -1.0
214,516 - 13855 mRNA_5487 0.87 -2.7
214,836 - -0.2
214,939 + -1.1
215,062 + +1.5
215,284 + 13856 mRNA_5488 0.20 -0.8
215,408 - 13856 mRNA_5488 0.26 +0.6
215,534 + 13856 mRNA_5488 0.32 +1.2
215,537 - 13856 mRNA_5488 0.32 +0.3
215,995 + 13856 mRNA_5488 0.54 +0.8
216,137 + 13856 mRNA_5488 0.61 +0.9
216,564 - 13856 mRNA_5488 0.82 +0.4
216,982 - -0.2
216,997 - -1.7
217,002 + -0.1
217,147 + -0.4
217,150 + +0.3
217,152 - -0.7
217,275 - +0.1
217,298 + +0.7
217,300 + -0.1
217,317 - -0.9
217,613 - 13857 mRNA_5489 0.11 -0.1
217,651 + 13857 mRNA_5489 0.13 +0.5
217,672 - 13857 mRNA_5489 0.14 +0.8
217,769 + 13857 mRNA_5489 0.18 -0.7
217,922 - 13857 mRNA_5489 0.25 +0.7
217,923 + 13857 mRNA_5489 0.25 +0.6

Or see this region's nucleotide sequence