Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5505

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13872 and 13873 are separated by 355 nucleotides mRNA_5504: 13872 - KOG4034 Uncharacterized conserved protein NOF (Neighbor of FAU), at 253,512 to 254,101 13872 mRNA_5505: 13873 - KOG0297 TNF receptor-associated factor, at 254,457 to 255,755 13873

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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253,457 + +0.3
254,147 + -0.1
254,163 + +0.3
254,176 - -0.9
254,401 + -1.4
254,645 - 13873 mRNA_5505 0.14 +0.2
254,646 + 13873 mRNA_5505 0.15 -0.3
254,755 - 13873 mRNA_5505 0.23 +0.1
254,894 - 13873 mRNA_5505 0.34 +0.1
254,896 - 13873 mRNA_5505 0.34 -0.2
255,024 - 13873 mRNA_5505 0.44 +1.1
255,036 - 13873 mRNA_5505 0.45 +0.4
255,251 + 13873 mRNA_5505 0.61 -0.6
255,642 + +0.6
255,658 + -0.0
255,918 - +0.6
256,070 - +0.9
256,090 + -0.2
256,098 - +0.6
256,117 + -0.8
256,212 - +0.1
256,222 - -1.0
256,236 - +0.5
256,360 + -0.1
256,530 + +1.2

Or see this region's nucleotide sequence