Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5510

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13877 and 13878 are separated by 735 nucleotides13878 and 13879 are separated by 616 nucleotides mRNA_5509: 13877 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 264,045 to 264,907 13877 mRNA_5510: 13878 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 265,643 to 266,758 13878 mRNA_5511: 13879 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 267,375 to 268,513 13879

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
265,467 - -0.9
265,492 + +1.4
265,493 + -0.9
265,529 - +0.1
265,607 + +0.0
265,632 - +1.2
265,753 - +0.9
265,907 - 13878 mRNA_5510 0.24 +1.5
266,084 + 13878 mRNA_5510 0.40 -0.1
266,188 + 13878 mRNA_5510 0.49 +1.3
266,498 + 13878 mRNA_5510 0.77 +1.2
266,502 - 13878 mRNA_5510 0.77 -1.6
267,189 + -0.3
267,503 - 13879 mRNA_5511 0.11 -0.1
267,521 + 13879 mRNA_5511 0.13 -0.9
267,625 - 13879 mRNA_5511 0.22 -0.7
267,636 + 13879 mRNA_5511 0.23 +0.5
267,683 - 13879 mRNA_5511 0.27 -1.9

Or see this region's nucleotide sequence