Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5529

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13896 and 13897 are separated by 244 nucleotides mRNA_5528: 13896 - HMMPfam-Protein of unknown function (DUF2416)-PF10315, at 305,773 to 306,425 13896 mRNA_5529: 13897 - K18045 SIW14, OCA3 tyrosine-protein phosphatase SIW14, at 306,670 to 307,631 13897

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
305,722 - +0.4
305,837 - -0.1
306,006 - 13896 mRNA_5528 0.36 -1.0
306,125 - 13896 mRNA_5528 0.54 -0.5
306,134 - 13896 mRNA_5528 0.55 +0.4
306,170 + 13896 mRNA_5528 0.61 +0.2
306,292 - 13896 mRNA_5528 0.79 -0.2
306,315 + 13896 mRNA_5528 0.83 +0.2
306,341 - 13896 mRNA_5528 0.87 -0.3
306,432 - -0.2
306,440 + -0.6
306,446 - -1.5
306,452 - +0.4
306,761 + +1.5
306,863 + 13897 mRNA_5529 0.20 +0.3
307,175 + 13897 mRNA_5529 0.52 -0.4
307,183 + 13897 mRNA_5529 0.53 +0.4
307,354 - 13897 mRNA_5529 0.71 -0.7
307,663 + +0.6
307,674 + -1.5
307,768 + +1.3
307,789 - +0.4
307,811 + +0.3
307,907 + -0.0
307,923 + +0.9
308,040 - +0.1
308,075 - +0.2
308,086 + -0.3
308,092 - +0.5
308,095 - +0.2
308,098 + +0.5
308,108 - +0.2
308,218 - +0.2
308,235 - +0.5
308,239 + -0.6
308,420 + +0.1
308,513 - -0.5
308,521 + +0.1
308,524 + +0.3
308,525 - +0.6
308,534 - -1.3
308,543 - -0.1
308,543 + -0.1
308,554 + -0.1

Or see this region's nucleotide sequence